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Calculate N50

Source: R/calculate_n50.R
calculate_n50.Rd

Calculates the N50 value: the read length at which 50 bases are contained in reads of that length or longer.

Usage

calculate_n50(seq_summary)

Arguments

seq_summary

A dataframe containing the sequencing summary

Value

Numeric N50 value in bases

Examples

if (FALSE) { # \dontrun{
 seq_summary <- data.frame(
  sequence_length_template = c(1, 2, 3, 4, 10)
)
calculate_n50(seq_summary)
} # }