Package index • NanoQuRe

Report Generation

Generate a full HTML QC report

generate_report(): Generate Report

Summary Tables

Functions that return summary data frames

sequencing_stats(): Sequencing Stats
quality_stats(): Quality Stats
calculate_n50(): Calculate N50

Yield & Throughput Plots

Plots showing sequencing output over time

plot_cumulative_yield(): Plot Cumulative Yield
plot_seq_throughput(): Plot Seq Throughput
plot_average_speed(): Plot Average Speed

Quality & Length Plots

Plots showing read quality and length distributions

plot_read_lengths(): Plot Read Lengths
plot_quality_distribution(): Plot Quality Distribution

Channel Activity Plots

Plots showing pore and channel behaviour

plot_active_channels(): Plot Active Channels
pore_activity_heatmap(): Pore Activity Heatmap
plot_double(): Plot Length and Q-score Over Time

Example Data

Bundled dataset for examples and vignettes

sample_data: Example Sequencing Summary

Package

NanoQuRe NanoQuRe-package: NanoQuRe: Quality Control for Oxford Nanopore Sequencing