Generates an interactive heatmap showing channel activity over time and
channel activity with respect to their disposition on the flowcell.
Usage
pore_activity_heatmap(seq_summary, platform = "minion", bin_width = 1)
Arguments
- seq_summary
A dataframe containing the sequencing summary
- platform
Flowcell used for sequencing: "minion" or
"promethion". Defaults to "minion".
- bin_width
Width of each time bin in hours for the channel-by-time
heatmap. Defaults to 1. Increase for very long runs to limit matrix size.
Details
Function contains helpers originally provided by Barbara Ottolini,
from Oxford Nanopore Technologies.
For reference see: https://github.com/sagrudd/nanopoRe/blob/master/R/FlowcellLayout.R
Examples
if (FALSE) { # \dontrun{
pore_activity_heatmap(sample_data, platform = "minion")
} # }
