Generate Report — generate_report • NanoQuRe

Generates an HTML QC report from one or more sequencing summary dataframes. Automatically selects a single-sample or multi-sample template based on the number of unique sample IDs present in the data.

Usage

generate_report(
  ...,
  output_file = "NanoQuRe_Report.html",
  output_dir = getwd(),
  platform = "minion"
)

Arguments

...: One or more dataframes containing sequencing summaries
output_file: Name of the output HTML file, default is "NanoQuRe_Report.html"
output_dir: Directory the rendered report is written to. Defaults to the current working directory.
platform: Flowcell platform forwarded to pore_activity_heatmap: "minion" or "promethion". Defaults to "minion".

Value

Path to the rendered HTML report

Examples

if (FALSE) { # \dontrun{
generate_report(sample_data, output_file = "QC_Report.html")
} # }