Plot Read Lengths

Generates an interactive plot with number of reads of each length in bases. Two vertical lines represent the mean read length and the N50 value calculated with calculate_n50.

Usage

plot_read_lengths(seq_summary, upper_limit = 4000, y_limit = NULL)

Arguments

seq_summary

A dataframe containing the sequencing summary

upper_limit

Upper limit of the x axis. Defaults to 4000.

y_limit

Upper limit of the y axis. If NULL (default), automatically set to the 99.9th percentile of read counts multiplied by 1.1.

Value

plotly object

Examples

if (FALSE) { # \dontrun{
plot_read_lengths(sample_data)
} # }