This page lists publications that use or describe ninetails for poly(A) tail analysis in Oxford Nanopore sequencing data.
Main publication
Please cite this paper when using ninetails in your research.
Gumińska N, Matylla-Kulińska K, Krawczyk PS, et al. Direct profiling of non-adenosines in poly(A) tails of endogenous and therapeutic mRNAs with Ninetails. Nat Commun 16, 2664 (2025). doi: 10.1038/s41467-025-57787-6
Related publications
Gumińska N, Czarnocka-Cieciura A, Zakryś B, Milanowski R. Poly(A) Profiling for Euglenozoans Using Oxford Nanopore Direct RNA Sequencing, Illustrated by the Example of Euglena gracilis. Methods Mol Biol. 2026;3013:91-108. doi: 10.1007/978-1-0716-5142-1_6. PMID: 41627732.
Maździarz MA, Krawczyk K, Lepiarczyk E, et al. Poly(A) tail dynamics, non-adenine incorporation and alternative polyadenylation shape the host transcriptome in COVID-19 pathogenesis. Sci Rep 15, 37986 (2025). doi: 10.1038/s41598-025-21969-5
Gumińska N, Pauzin FP, Kuźniewska B, Miłek J, Wardaszka-Pianka P, Krawczyk PS, Mroczek S, Jeleń S, Pagenhart PU, Bramham CR, Dziembowski A, Dziembowska M. Polyadenylation landscape of in vivo long-term potentiation in the rat brain. RNA. 2025 Nov 17;31(12):1712-1734. doi: 10.1261/rna.080485.125. PMID: 40962679; PMCID: PMC12621599.
Czarnocka-Cieciura A, Brouze M, Gumińska N, et al. Comprehensive analysis of poly(A) tails in mouse testes and ovaries using Nanopore Direct RNA Sequencing. Sci Data 12, 43 (2025). doi: 10.1038/s41597-024-04226-8