Correct read class labels for backward compatibility

Resolves naming convention changes between pre-release and current versions of ninetails. Previously, read classes were labeled "modified", "unmodified", and "unclassified". These have been changed to "decorated", "blank", and "unclassified", since the presence of non-A within a poly(A) tail does not necessarily result from post-transcriptional modification; it may be caused by semi-templated tails, polymerase slippage, or other mechanisms.

Usage

correct_labels(df)

Arguments

df

Data frame. Ninetails read classification results (class_data) or the output of merge_nonA_tables. Must contain a class column.

Value

Data frame with corrected class labels in the class column.

Examples

if (FALSE) { # \dontrun{

class_data <- ninetails::correct_labels(class_data)

} # }