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Scatterplot of nonA residue positions within poly(A) tail

Source: R/ninetails_plotting_functions.R
plot_rug_density.Rd

This function allows to produce the scatterplot of raw non-A residue predictions (y-axis) along the user-defined tail span (x-axis). The resulting plot also contains the rugs and ridges along the axes, which are a visual aid designed to better show the distributions of given residue.

Usage

plot_rug_density(residue_data, base, max_length)

Arguments

residue_data

A dataframe or tibble containig non-A residue predictions made by ninetails pipeline.

base

character. One of the following ["C"/"G","U"]. This parameter defines which nonadenosine is to be plotted. It is obligatory to prevent the overplotting.

max_length

numeric [1]. This parameter controls maximum length of the poly(A) tail to be taken into consideration for plotting.

Value

a ggplot2 object

Examples

if (FALSE) { # \dontrun{
ninetails::plot_rug_density(residue_data=residue_data, base="C", max_length=100)
} # }