This function takes the merged cDNA results and formats them as the standard
ninetails output format (same as create_outputs_dorado) with two tables:
read_classes and nonadenosine_residues. The key difference from DRS is the
additional tail_type column indicating polyA or polyT.
Usage
save_cdna_outputs(outputs, save_dir, prefix = "")
Arguments
- outputs
List. Merged results from merge_cdna_results().
- save_dir
Character string. Directory where outputs will be saved.
- prefix
Character string. Optional prefix for output file names.
Value
List containing standard ninetails output format:
- read_classes
Data frame with read classifications including tail_type
- nonadenosine_residues
Data frame with modifications including tail_type
Examples
if (FALSE) { # \dontrun{
final_results <- save_cdna_outputs(
outputs = merged_results,
save_dir = "path/to/output/",
prefix = "experiment1"
)
} # }
